At the previous entry, I presented how we can use applescript to control asegstats2table and aparcstats2table commands in order to generate text/ascii tables of freesurfer stats data for all subjects in the directory at once. At this entry I will show how we can write a bash script to control both asegstats2table and aparcstats2table commands. This bash script can be used in both Mac OS X and Linux.
freesurferstats2table_bash.zip
http://surfer.nmr.mgh.harvard.edu/fswiki/freesurferstats2table
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The following script uses aparcstats2table and asegstats2table to extract cortical thickness, surface area and volume of manually defined regions of interest using stats files that resulted from qdec.
http://surfer.nmr.mgh.harvard.edu/fswiki/freesurferstats2table
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1 comment:
Thanks. :) Really saved me the time to code all these up. Also, made me more confident of what I am doing lol. Cheers, mate. I'd buy you a beer/bottle if I meet you at HBM.
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