Sunday, 29 January 2012

Flip left and right orientation and check image orientation in FSL

FSL image_flip/check is an applescript that written to flip left and right orientation of group of brain images. It can be used as well for checking image orientation of group of images in sequence where presentation of each image lasts for a proper time (defined by user; 10 seconds as an example).
 Click her to download script


Please leave your feedback if you like this tool or a suggestion if you think it needs to be improved!


Related links
Batching FSL tools and utilities using Applescript "1" (BET)
Batching FSL tools and utilities using Applescript and bash script "2" (SIENAX)
Batching FSL tools and utilities using Applescript "3" (fslsplit)
Batching FSL tools and utilities using Applescript and bash script "4" (fslchfiletype) Analyze2Nifti--Nifti2Analyze
Batching FSL tools and utilities using Applescript "5" (FIRST)
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1 comment:

Anonymous said...

Dear Jamaan Alghamdi,

I have used your script to flip images successfully with nifti files just a couple days ago. Now I am trying again, but it's not working anymore. It always runs into error number -10004. Do you know what the problem could be?

Thanks a lot for writing this script!

29 January 2016 at 19:29

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